Insight Made Easy

Get the precise results your research deserves with our complete offering of automated, efficient data analysis software. Whether you're evaluating single cells, real-time PCR results or genotyping data, our advanced software programs include standard analysis techniques as well as superior interpretation methods to help you make the most of your work.

Access Array

Access Array AX Controller   v2.8   Updated May 16, 2018

The latest software for the Access Array™ IFC Controller AX. To install, follow the instructions in the Updating Software and Scripts section of the IFC Controller AX User Guide (PN 68000157).

FC1 Cycler Software   v1.6   Updated May 16, 2018

The latest software for the FC1™ cycler. To install, follow the instructions in the Updating Software and Protocols section of the FC1 Cycler User Guide (PN 100-1279).

Biomark HD

Biomark & EP1 Software  Updated May 16, 2018

The latest software for the Biomark™ HD, Biomark and EP1™ systems. Package includes software for data collection, real-time PCR analysis, genotyping, digital PCR and melting curve analysis. To install, follow the instructions in the Updating the Biomark/EP1 Software Quick Reference (PN 101-6793).

CopyCount-CNV Software   v2.1.9.2   Updated September 12, 2018

The cloud-based software analyzes raw fluorescence qPCR data from Biomark™ HD to determine absolute quantification and provide DNA copy number results. Applications include transgene copy number, event-sorting data analysis, and seed zygosity determination. Each license supports one year of use from the date of activation and may be ordered through your Fluidigm account representative.

GO Immuno-Oncology Workbench   v1.0   Updated August 29, 2018

GO Immuno-Oncology Workbench is designed to further analyze primary data obtained with the Advanta™ IO Gene Expression Assay. GO Immuno-Oncology Workbench enables users to analyze large cohorts, discover population-level trends and accelerate checkpoint inhibitor research. It is designed by GenomOncology, a leader in the field of cancer molecular pathology analysis. Each license supports one year of use from the date of activation and may be ordered through your Fluidigm account representative.

IFC Controllers Software (HX, MX, RX, and WX)  Updated May 16, 2018

The latest software for IFC Controllers HX, MX, RX and WX. To install, follow the instructions in the Update Software and Scripts section of the relevant IFC Controller User Guide (HX/MX, PN 68000112; RX, PN 100-3385; WX, PN 100-2297).

Singular Analysis Toolset Software   v3.6.2   Updated May 16, 2018

An innovative, open-source solution for analyzing and visualizing data, the Singular™ Analysis Toolset offers powerful methods for identifying gene expression and mutation patterns at the single-cell level. Designed for use with Biomark™ and C1™ systems.

C1

C1 mRNA Seq HT Demultiplex Script   v2.0.1   Updated May 16, 2018

The C1™ mRNA Sequencing High Throughput Demultiplexer Perl script application programming interface (API) allows automatic demultiplexing of individual single-cell samples from each column using the cell barcodes on the R1 reads. The API also automatically separates the large FASTQ file generated from each column pool into 40 pairs. This enables your C1 medium-cell HT IFC data to be preprocessed in a more efficient way.

C1 System Software   v2.2.3   Updated February 7, 2018

The C1™ system supports DNA sequencing, mRNA sequencing, targeted gene expression, miRNA analysis and additional applications through the C1 Open App™ IFC (integrated fluidic circuit). Download the C1 system software update and then follow the instructions for updating the C1 system software.

Script Builder Software   v2.1.1   Updated January 17, 2017

C1™ Script Builder™ allows you to create innovative single-cell applications to deeply explore cellular heterogeneity and the functional attributes of every cell population. Download the latest version of Script Builder here, then follow the instructions for installation. Note: Script Builder can be used without a license to design custom protocols. A license is required to transform custom protocols into scripts and install them on your C1 system.

Script Hub

Script Hub™ is your central source for C1™ methods and applications. Get access to scripts and other applications developed by Fluidigm and the C1 community, including epigenetics, mRNA sequencing, DNA sequencing, cell staining and more.

Singular Analysis Toolset Software   v3.6.2   Updated May 16, 2018

An innovative, open-source solution for analyzing and visualizing data, the Singular™ Analysis Toolset offers powerful methods for identifying gene expression and mutation patterns at the single-cell level. Designed for use with Biomark™ and C1™ systems.

EP1

Biomark & EP1 Software  Updated May 16, 2018

The latest software for the Biomark™ HD, Biomark and EP1™ systems. Package includes software for data collection, real-time PCR analysis, genotyping, digital PCR and melting curve analysis. To install, follow the instructions in the Updating the Biomark/EP1 Software Quick Reference (PN 101-6793).

IFC Controllers Software (HX, MX, RX, and WX)  Updated May 16, 2018

The latest software for IFC Controllers HX, MX, RX and WX. To install, follow the instructions in the Update Software and Scripts section of the relevant IFC Controller User Guide (HX/MX, PN 68000112; RX, PN 100-3385; WX, PN 100-2297).

Helios, a CyTOF System

CyTOF Software   v6.7   Updated May 16, 2018

CyTOF® 6.7 system control software is designed to be user-friendly and intuitive for system control, and to provide continuous instrument feedback and diagnostic capabilities to users. This gives users the ability to troubleshoot quickly and effectively as well as to provide the highest quality of data output.

Fluidigm Cytobank Analysis

Cytobank cloud-based data analysis software turns high-content data into high-impact knowledge by providing tools optimized for mass cytometry, including clustering (SPADE and viSNE), heat maps, dot plots, histograms and statistics, along with the ability to share your data with colleagues and collaborators.

Hyperion Imaging System

CyTOF Software   v6.7   Updated May 16, 2018

CyTOF® 6.7 system control software is designed to be user-friendly and intuitive for system control, and to provide continuous instrument feedback and diagnostic capabilities to users. This gives users the ability to troubleshoot quickly and effectively as well as to provide the highest quality of data output.

histoCAT

The histoCAT™ software is an innovative computational Imaging Mass Cytometry™ analysis toolbox that enables comprehensive analysis of cellular phenotypes and their interrelationships within the spatial context of the tissue microenvironment. Developed in the laboratory of Bernd Bodenmiller at the University of Zurich, histoCAT includes novel algorithms to identify the relationships and “social networks” between cells in healthy and disease states and across experimental cohorts. Under the agreement with the University of Zurich, Fluidigm obtained rights to globally distribute histoCAT along with the Hyperion™ Imaging System.

MCD Viewer   v1.0   Updated October 24, 2017

MCD™ Viewer is post-acquisition data processing software that allows users to visualize, review, and export Imaging Mass Cytometry™ data acquired with the Hyperion™ Imaging System and CyTOF® Software 6.7.

Juno

Juno Software   3.11.1   Updated March 15, 2017

Juno™ software update to enable running the Juno Targeted DNA Sequencing Library Preparation system protocol version 3.11.1

Polaris

Singular Analysis Toolset Software   v3.6.2   Updated May 16, 2018

An innovative, open-source solution for analyzing and visualizing data, the Singular™ Analysis Toolset offers powerful methods for identifying gene expression and mutation patterns at the single-cell level. Designed for use with Biomark™ and C1™ systems.