What tools does TraCeR analysis use?

TraCeR analysis uses several pre-existing, open‑source toolsets to extract, reconstruct and assign T cell receptor sequence information and nomenclature to single-cell mRNA sequencing data. The pre-existing tool sets used include Bowtie 2, Trinity, IgBLAST and Kallisto. The single-cell TCR Seq application note provides details for downloading each component and integrating them into one cohesive analysis pipeline.